Skip to the content.


scplotlib is a python plotting library for the SingleCell object. It is based on matplotlib. It can generate various plots for data stored in a SingleCell object such as:

  1. Visualizing high dimensional data - t-SNE plots, PCA plots

  2. Specialized plots - heatmaps, silhouette plots, outlier score plots


To install scplotlib, run the following command

pip install scplotlib


Check the project homepage for documentation.


Contact the author on to give feedback/suggestions for further improvements and to report issues.